Package: WebGestaltR
Type: Package
Title: Gene Set Analysis Toolkit WebGestaltR
Version: 1.0.0
Date: 2024-03-01
Authors@R: c(
        person("John", "Elizarraras", email = "john.elizarraras@bcm.edu", role = c("aut", "cre")),
        person("Jing", "Wang", email = "jingwang.uestc@gmail.com", role = "aut"),
        person("Yuxing", "Liao", email = "yuxingliao@gmail.com", role = c("aut")),
        person("Eric", "Jaehnig", email = "Eric.Jaehnig@bcm.edu", role = c("ctb")),
        person("Zhiao", "Shi", email = "Zhiao.Shi@bcm.edu", role = c("ctb")),
        person("Quanhu", "Sheng", email = "shengqh@gmail.com", role = c("ctb"))
        )
Description: The web version WebGestalt <https://www.webgestalt.org>
        supports 12 organisms, 354 gene identifiers and 321,251
        function categories. Users can upload the data and functional
        categories with their own gene identifiers. In addition to the
        Over-Representation Analysis, WebGestalt also supports Gene Set
        Enrichment Analysis and Network Topology Analysis. The
        user-friendly output report allows interactive and efficient
        exploration of enrichment results. The WebGestaltR package not
        only supports all above functions but also can be integrated
        into other pipeline or simultaneously analyze multiple gene
        lists.
License: LGPL
URL: https://github.com/bzhanglab/WebGestaltR,
        https://bzhanglab.github.io/WebGestaltR/
LazyLoad: yes
Depends: R (>= 4.0)
Imports: methods, dplyr, doRNG, readr, parallel (>= 3.3.2), doParallel
        (>= 1.0.10), foreach (>= 1.4.0), jsonlite, httr, rlang,
        svglite, whisker, apcluster, Rcpp, cluster, poolr
NeedsCompilation: yes
LinkingTo: Rcpp
RoxygenNote: 7.3.2
SystemRequirements: Cargo (Rust's package manager), rustc v1.63.0+
Config/rextendr/version: 0.4.2
Config/WebGestaltR/MSRV: 1.63.0
Encoding: UTF-8
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libfribidi-dev
        libharfbuzz-dev libicu-dev libpng-dev libssl-dev libx11-dev
        libclang-dev
Repository: https://bzhanglab.r-universe.dev
Date/Publication: 2026-06-11 15:10:06 UTC
RemoteUrl: https://github.com/bzhanglab/webgestaltr
RemoteRef: HEAD
RemoteSha: 69cf76d8940bdb1e76a47a1c68f0c967a116a91c
Packaged: 2026-06-11 16:25:26 UTC; root
Author: John Elizarraras [aut, cre],
  Jing Wang [aut],
  Yuxing Liao [aut],
  Eric Jaehnig [ctb],
  Zhiao Shi [ctb],
  Quanhu Sheng [ctb]
Maintainer: John Elizarraras <john.elizarraras@bcm.edu>