Package: WebGestaltR 1.0.0

John Elizarraras

WebGestaltR: Gene Set Analysis Toolkit WebGestaltR

The web version WebGestalt <https://www.webgestalt.org> supports 12 organisms, 354 gene identifiers and 321,251 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis and Network Topology Analysis. The user-friendly output report allows interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneously analyze multiple gene lists.

Authors:John Elizarraras [aut, cre], Jing Wang [aut], Yuxing Liao [aut], Eric Jaehnig [ctb], Zhiao Shi [ctb], Quanhu Sheng [ctb]

WebGestaltR_1.0.0.tar.gz
WebGestaltR_1.0.0.zip(r-4.5)WebGestaltR_1.0.0.zip(r-4.4)WebGestaltR_1.0.0.zip(r-4.3)
WebGestaltR_1.0.0.tgz(r-4.4-x86_64)WebGestaltR_1.0.0.tgz(r-4.4-arm64)WebGestaltR_1.0.0.tgz(r-4.3-arm64)
WebGestaltR_1.0.0.tar.gz(r-4.5-noble)WebGestaltR_1.0.0.tar.gz(r-4.4-noble)
WebGestaltR.pdf |WebGestaltR.html✨
WebGestaltR/json (API)
NEWS

# Install 'WebGestaltR' in R:
install.packages('WebGestaltR', repos = c('https://bzhanglab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/bzhanglab/webgestaltr/issues

On CRAN:

9.08 score 34 stars 175 scripts 562 downloads 30 mentions 25 exports 51 dependencies

Last updated 1 months agofrom:fe2a299dbc. Checks:OK: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 14 2024
R-4.5-win-x86_64OKNov 14 2024
R-4.5-linux-x86_64OKNov 14 2024
R-4.4-win-x86_64OKNov 14 2024
R-4.4-mac-x86_64OKNov 14 2024
R-4.4-mac-aarch64OKNov 14 2024
R-4.3-win-x86_64OKNov 14 2024
R-4.3-mac-aarch64OKNov 14 2024

Exports:affinityPropagationformatCheckgoSlimSummaryGOSlimSummaryidMappingIDMappingidToSymbollistArchiveUrllistArchiveURLlistGeneSetlistIdTypelistIDTypelistOrganismlistReferenceSetloadGeneSetmultiswGseaprepareGseaInputprepareInputMatrixGseareadGmtswGseaWebGestaltRWebGestaltR_batchWebGestaltRBatchWebGestaltRMultiOmicsweightedSetCover

Dependencies:apclusteraskpassbitbit64clicliprclustercodetoolscpp11crayoncurldigestdoParalleldoRNGdplyrfansiforeachgenericsgluehmshttriteratorsjsonlitelatticelifecyclemagrittrmathjaxrMatrixmimeopensslpillarpkgconfigpoolrprettyunitsprogressR6Rcppreadrrlangrngtoolssvglitesyssystemfontstibbletidyselecttzdbutf8vctrsvroomwhiskerwithr

Installation

Rendered fromInstallation.Rmdusingknitr::rmarkdownon Nov 14 2024.

Last update: 2024-05-30
Started: 2024-03-07