Package: WebGestaltR 1.0.0

John Elizarraras

WebGestaltR: Gene Set Analysis Toolkit WebGestaltR

The web version WebGestalt <https://www.webgestalt.org> supports 12 organisms, 354 gene identifiers and 321,251 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis and Network Topology Analysis. The user-friendly output report allows interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneously analyze multiple gene lists.

Authors:John Elizarraras [aut, cre], Jing Wang [aut], Yuxing Liao [aut], Eric Jaehnig [ctb], Zhiao Shi [ctb], Quanhu Sheng [ctb]

WebGestaltR_1.0.0.tar.gz
WebGestaltR_1.0.0.zip(r-4.5)WebGestaltR_1.0.0.zip(r-4.4)WebGestaltR_1.0.0.zip(r-4.3)
WebGestaltR_1.0.0.tgz(r-4.4-x86_64)WebGestaltR_1.0.0.tgz(r-4.4-arm64)WebGestaltR_1.0.0.tgz(r-4.3-arm64)
WebGestaltR_1.0.0.tar.gz(r-4.5-noble)WebGestaltR_1.0.0.tar.gz(r-4.4-noble)
WebGestaltR.pdf |WebGestaltR.html✨
WebGestaltR/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/bzhanglab/webgestaltr/issues

On CRAN:

25 exports 34 stars 4.65 score 51 dependencies 30 mentions 139 scripts 582 downloads

Last updated 2 months agofrom:cec328571c. Checks:OK: 8. Indexed: yes.

Exports:affinityPropagationformatCheckgoSlimSummaryGOSlimSummaryidMappingIDMappingidToSymbollistArchiveUrllistArchiveURLlistGeneSetlistIdTypelistIDTypelistOrganismlistReferenceSetloadGeneSetmultiswGseaprepareGseaInputprepareInputMatrixGseareadGmtswGseaWebGestaltRWebGestaltR_batchWebGestaltRBatchWebGestaltRMultiOmicsweightedSetCover

Dependencies:apclusteraskpassbitbit64clicliprclustercodetoolscpp11crayoncurldigestdoParalleldoRNGdplyrfansiforeachgenericsgluehmshttriteratorsjsonlitelatticelifecyclemagrittrmathjaxrMatrixmimeopensslpillarpkgconfigpoolrprettyunitsprogressR6Rcppreadrrlangrngtoolssvglitesyssystemfontstibbletidyselecttzdbutf8vctrsvroomwhiskerwithr