Package: WebGestaltR 1.0.0

John Elizarraras

WebGestaltR: Gene Set Analysis Toolkit WebGestaltR

The web version WebGestalt <https://www.webgestalt.org> supports 12 organisms, 354 gene identifiers and 321,251 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis and Network Topology Analysis. The user-friendly output report allows interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneously analyze multiple gene lists.

Authors:John Elizarraras [aut, cre], Jing Wang [aut], Yuxing Liao [aut], Eric Jaehnig [ctb], Zhiao Shi [ctb], Quanhu Sheng [ctb]

WebGestaltR_1.0.0.tar.gz
WebGestaltR_1.0.0.zip(r-4.5)WebGestaltR_1.0.0.zip(r-4.4)WebGestaltR_1.0.0.zip(r-4.3)
WebGestaltR_1.0.0.tgz(r-4.5-x86_64)WebGestaltR_1.0.0.tgz(r-4.5-arm64)WebGestaltR_1.0.0.tgz(r-4.4-x86_64)WebGestaltR_1.0.0.tgz(r-4.4-arm64)WebGestaltR_1.0.0.tgz(r-4.3-arm64)
WebGestaltR_1.0.0.tar.gz(r-4.5-noble)WebGestaltR_1.0.0.tar.gz(r-4.4-noble)
WebGestaltR.pdf |WebGestaltR.html✨
WebGestaltR/json (API)
NEWS

# Install 'WebGestaltR' in R:
install.packages('WebGestaltR', repos = c('https://bzhanglab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bzhanglab/webgestaltr/issues

Pkgdown site:https://bzhanglab.github.io

On CRAN:

Conda:

rustcargo

9.18 score 35 stars 180 scripts 434 downloads 30 mentions 25 exports 51 dependencies

Last updated 13 hours agofrom:5a56553f4a. Checks:8 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 27 2025
R-4.5-win-x86_64NOTEMar 27 2025
R-4.5-mac-x86_64NOTEMar 27 2025
R-4.5-mac-aarch64NOTEMar 27 2025
R-4.5-linux-x86_64OKMar 27 2025
R-4.4-win-x86_64OKMar 27 2025
R-4.4-mac-x86_64OKMar 27 2025
R-4.4-mac-aarch64OKMar 27 2025
R-4.4-linux-x86_64OKMar 27 2025
R-4.3-win-x86_64OKMar 27 2025
R-4.3-mac-aarch64OKMar 27 2025

Exports:affinityPropagationformatCheckgoSlimSummaryGOSlimSummaryidMappingIDMappingidToSymbollistArchiveUrllistArchiveURLlistGeneSetlistIdTypelistIDTypelistOrganismlistReferenceSetloadGeneSetmultiswGseaprepareGseaInputprepareInputMatrixGseareadGmtswGseaWebGestaltRWebGestaltR_batchWebGestaltRBatchWebGestaltRMultiOmicsweightedSetCover

Dependencies:apclusteraskpassbitbit64clicliprclustercodetoolscpp11crayoncurldigestdoParalleldoRNGdplyrfansiforeachgenericsgluehmshttriteratorsjsonlitelatticelifecyclemagrittrmathjaxrMatrixmimeopensslpillarpkgconfigpoolrprettyunitsprogressR6Rcppreadrrlangrngtoolssvglitesyssystemfontstibbletidyselecttzdbutf8vctrsvroomwhiskerwithr

Installation

Rendered fromInstallation.Rmdusingknitr::rmarkdownon Mar 27 2025.

Last update: 2025-02-14
Started: 2024-03-07