R-universe - bzhanglab (Zhang Lab )

WebGestaltR - Gene Set Analysis Toolkit WebGestaltR

The web version WebGestalt <https://www.webgestalt.org> supports 12 organisms, 354 gene identifiers and 321,251 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis and Network Topology Analysis. The user-friendly output report allows interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneously analyze multiple gene lists.

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rustcargo

8.24 score 38 stars 230 scripts 483 downloads

clinicalomicsdbR - Interface with the 'ClinicalOmicsDB' API, Allowing for Easy Data Downloading and Importing

Provides an interface to the 'ClinicalOmicsDB' API, allowing for easy data downloading and importing. 'ClinicalOmicsDB' is a database of clinical and 'omics' data from cancer patients. The database is accessible at <http://trials.linkedomics.org>.

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3.30 score 4 stars 2 scripts 177 downloads